cst-317:classes2023
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| ===== References ===== | ===== References ===== | ||
| - | * {{http://www.chelseagreen.com/thinking-in-systems|Thinking in Systems}}. Donella Meadows, Chelsea Green Publishing, 2008. | + | * [[http://www.chelseagreen.com/thinking-in-systems|Thinking in Systems]]. Donella Meadows, Chelsea Green Publishing, 2008. |
| * {{http://public.wsu.edu/~forda/AA2nd.html|Modeling the Environment (2nd edition)}}. Andrew Ford, Island Press, 2010. | * {{http://public.wsu.edu/~forda/AA2nd.html|Modeling the Environment (2nd edition)}}. Andrew Ford, Island Press, 2010. | ||
| - | * {{http://forecast.uchicago.edu/index.html|Global Warming: Understanding the Forecast}}. Wiley, 2011. | ||
| ===== Software ===== | ===== Software ===== | ||
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| |1 |{{:cst-317:1-logica-programacao.pptx|Lógica de Programação}} | | | | | | |1 |{{:cst-317:1-logica-programacao.pptx|Lógica de Programação}} | | | | | | ||
| |2 |{{:cst-317:2-lua-for-terrame.ppt|Lua for TerraME}} | | | nil, number, boolean, string, table, function | {{:cst-317:exercicios-lua.pdf|Lua exercises}} | | |2 |{{:cst-317:2-lua-for-terrame.ppt|Lua for TerraME}} | | | nil, number, boolean, string, table, function | {{:cst-317:exercicios-lua.pdf|Lua exercises}} | | ||
| + | |3 |{{:cst-317:3-system-dynamics-2.ppt|Systems Dynamics}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/Tub.lua|Tub}} (sysdyn) | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/tub-scenarios.lua|tub-scenarios}} (sysdyn) | Model, Event, Timer, Chart | | | ||
| + | |4 | {{:cst-317:4-feedbacks-2.ppt|Feedbacks}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/Coffee.lua|Coffee}}, {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/PopulationGrowth.lua|PopulationGrowth}} (sysdyn) | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/coffee-scenarios.lua|coffee-scenarios}}, {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/population-scenarios-1.lua|population-scenarios-1}}, {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/population-scenarios-2.lua|population-scenarios-2}} (sysdyn) | Environment, instance of Model | {{:cst-317:exercise1.pdf|Water in the Dam}} **Deadline: 25 July 23h59**| | ||
| + | |5 | {{:cst-317:5-epidemics.ppt|Epidemics}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/SIR.lua|SIR}} (sysdyn) | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/infection-scenarios-1.lua|infection-scenarios-1}}, {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/infection-scenarios-2.lua|infection-scenarios-2}}, {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/examples/infection-scenarios-3.lua|infection-scenarios-3}} (sysdyn) | | | | ||
| + | |6 | {{:cst-317:6-chaos.ppt|Chaos}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/ChaoticGrowth.lua|ChaoticGrowth}} (sysdyn), {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/Lorenz.lua|Lorenz}} (sysdyn)| | | | | ||
| + | |7 | {{:cst-317:7-predator-prey.ppt|Predator-Prey}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/sysdyn/master/lua/PredatorPrey.lua|PredatorPrey}} (sysdyn)| | | | | ||
| + | |8 | {{:cst-317:8-cellular-automaton-2.ppt|Cellular Automata}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/ca/master/lua/Life.lua|Life}} (ca) | |Cell, CellularSpace, Neighborhood, Map, Random | | | ||
| + | |9 | {{:cst-317:9-fire-in-the-forest-2.ppt|Fire in the Forest}} | {{https://raw.githubusercontent.com/pedro-andrade-inpe/ca/master/lua/Fire.lua|Fire}} (ca) | | | {{:cst-317:exercise2.pdf|Fire in the Forest}} **Deadline: 14 Aug 23h59BRT**| | ||
| + | |10 | {{:cst-317:10-runoff-2.ppt|Runoff}} | {{https://raw.githubusercontent.com/TerraME/terrame/master/packages/gis/examples/runoff.lua|Runoff}} (gis) | | | | | ||
| + | |11 | {{:cst-317:11-cellular-data-v2.ppt|Cellular Data}} | {{https://raw.githubusercontent.com/TerraME/terrame/master/packages/gis/data/cabecadeboi.lua|Cabeca de Boi}} (gis) | | | | | ||
| + | |12 | {{:cst-317:12-deforestation.ppt|Deforestation}} | | | | | | ||
| + | |13 | {{:cst-317:13-agent-based-modeling.ppt|Agent-based Modeling}} | | | | | | ||
| + | |14 | {{:cst-317:14-predator-prey.ppt|Predator Prey}} | | | | | | ||
| + | |15 | {{:cst-317:15-game-theory.ppt|Game Theory}} | | | | | | ||
| + | |||
| ===== Final Project ===== | ===== Final Project ===== | ||
| - | **Deadline: TBD** | + | **Deadline: 04 Sep 23h59 BRT** |
| + | |||
| + | |||
| + | The final project consists of an implementation and discussion of a model described in a scientific paper that uses one of the paradigms presented during the course. There are some suggestions below. In case of replicating a paper, it is possible to submit the results to [[http://rescience.github.io/|ReScience C]]. | ||
| + | |||
| + | ==== System Dynamics ==== | ||
| + | | | Any model from Andrew Ford's [[http://modeling-the-environment.com/|Modeling the Environment]] | | ||
| + | | | [[http://www.easterbrook.ca/steve/2013/01/simple-climate-models-to-play-with-in-the-classroom/|Simple climate models]]| | ||
| + | | | [[http://citeseerx.ist.psu.edu/viewdoc/download;jsessionid=CB3EA777DE19841D563DC6241FA916B6?doi=10.1.1.497.9850&rep=rep1&type=pdf|Scherer A. & McLean A., (2002) Mathematical models of vaccination, British Medical Bulletin 2002;62 187-199.]] | | ||
| + | | | [[http://calculadora2050brasil.epe.gov.br/calculadora.html|Energy scenarios for Brazil (in portuguese)]]| | ||
| + | |||
| + | ==== Cellular Automata ==== | ||
| + | | Ian, Paula, Nayara| Emmendorfer, Leonardo Ramos, and Luiz Alberto Diaz Rodrigues. "Um modelo de autômatos celulares para o espalhamento geográfico de epidemias." (2001).| | ||
| + | |Fábio e Leila | Vilcarromero, Ângela CS, Rosana SM Jafelice, and Laécio C. Barros. "Autômato Celular no Estudo de um Modelo Presa-Predador." (2010): 147-156.| | ||
| + | |Matheus | {{http://www.dpi.inpe.br/gilberto/cursos/papers/Berjak2002.pdf|S. G. Berjak, J. W. Hearne (2002) An improved cellular automaton model for simulating fire in a spatially heterogeneous Savanna system. Ecological Modelling 148(2):133–15}}| | ||
| + | | | {{http://www.dpi.inpe.br/gilberto/cursos/papers/Fisch1991.pdf|Fisch, Robert, Janko Gravner, and David Griffeath. "Threshold-range scaling of excitable cellular automata." Statistics and Computing 1.1 (1991): 23-39.}} | | ||
| + | | | {{http://www.dpi.inpe.br/gilberto/cursos/papers/Fisch1992.pdf|Fisch, Robert. "Clustering in the one-dimensional three-color cyclic cellular automaton." The Annals of Probability (1992): 1528-1548.}} | | ||
| + | | | [[https://qlfiles.net/the-ql-files/next-nearest-neighbors-cellular-automata/|Li, Wentian. "Complex patterns generated by next nearest neighbors cellular automata." Computers & Graphics 13.4 (1989): 531-537.]] | | ||
| + | | | {{http://www.dpi.inpe.br/gilberto/cursos/papers/Chate1990.pdf|Chate, H. & Manneville, P. (1990). Criticality in cellular automata. Physica D (45), 122-135.}}| | ||
| + | | | Li, W., Packard, N., & Langton, C. (1990). Transition Phenomena in Cellular Automata Rule Space. Physica D (45), 77-94. | | ||
| + | | | Colasanti, R. L., R. Hunt, and L. Watrud. "A simple cellular automaton model for high-level vegetation dynamics." Ecological Modelling 203.3 (2007): 363-374.| | ||
| + | | | {{http://www.dpi.inpe.br/gilberto/cursos/papers/Yassemi2008.pdf|S. Yassemi, S. Dragićevića, M. Schmidt(2008), Design and implementation of an integrated GIS-based cellular automata model to characterize forest fire behaviour | ||
| + | , Ecological Modelling, 210(1–2), 71–84}}| | ||
| + | | | {{http://pdf.blucher.com.br.s3-sa-east-1.amazonaws.com/designproceedings/sigradi2016/450.pdf| Araujo and Celani (20166), Exploring Weaire-Phelan through Cellular Automata: A proposal for a structural variance-producing engine}}| | ||
| + | | | [[http://link.aps.org/pdf/10.1103/PhysRevE.58.1425|Rickert, M., Nagel, K., Schreckenberg, M. and Latour, A., 1996. Two lane traffic simulations using cellular automata. Physica A: Statistical Mechanics and its Applications, 231(4), pp.534-550.]]| | ||
| + | | | [[ http://www.academia.edu/download/30249270/m283xl03.pdf| Karafyllidis, I. and Thanailakis, A., 1997. A model for predicting forest fire spreading using cellular automata. Ecological Modelling, 99(1), pp.87-97.]]| | ||
| + | | | [[ http://search.proquest.com/openview/6fc409331fb6e6f5a21e4fc783349e7c/1.pdf?pq-origsite=gscholar&cbl=1456339| Ermentrout, G.B. and Edelstein-Keshet, L., 1993. Cellular automata approaches to biological modeling. Journal of theoretical Biology, 160(1), pp.97-133.]]| | ||
| + | | | [[ https://www.sciencedirect.com/science/article/pii/S0022519303002443| Alarcón, T., Byrne, H.M. and Maini, P.K., 2003. A cellular automaton model for tumour growth in inhomogeneous environment. Journal of theoretical biology, 225(2), pp.257-274.]]| | ||
| + | | | [[https://www.sciencedirect.com/science/article/pii/S0378437107006085 | Yuan, W. and Tan, K.H., 2007. An evacuation model using cellular automata. Physica A: Statistical Mechanics and its Applications, 384(2), pp.549-566.]]| | ||
| + | | | [[ http://www.bioinfo.de/isb/2002020035/main.html | Dormann, S. and Deutsch, A., 2002. Modeling of self-organized avascular tumor growth with a hybrid cellular automaton. In silico biology, 2(3), pp.393-406.]]| | ||
| + | | | [[https://pdfs.semanticscholar.org/4f78/2bcb7bf2c0d4e1a210a41b80a4f664efc9f8.pdf|Bersini, H. and Detours, V., 1994, July. Asynchrony induces stability in cellular automata based models. In Artificial Life IV (pp. 382-387). MIT Press, MA.]]| | ||
| + | |||
| + | ==== Agent-based Modeling ==== | ||
| + | | | Dou, Y., Millington, J.D.A., Bicudo Da Silva, R.F., McCord, P., Viña, A., Song, Q., Yu, Q., Wu, W., Batistella, M., Moran, E., & Liu, J. (2019). Land-use changes across distant places: Design of a telecoupled agent-based model. Journal of Land Use Science, 14(3), 191–209. https://doi.org/10.1080/1747423X.2019.1687769| | ||
| + | | | Dou, Y., Yao, G., Herzberger, A., Da Silva, R.F.B., song, Q., Hovis, C., Batistella, M., Moran, E., Wu, W., & Liu, J. (2020). Landuse changes in distant places: Implementation of a telecoupled agent-based model. Journal of Artificial Societies and Social Simulation, 23(1), 11. https://doi.org/10.18564/jasss.4211 | | ||
| + | | | Any paper from {{http://jasss.soc.surrey.ac.uk/JASSS.html|Journal of Artificial Societies and Social Simulation}} | | ||
| + | | | Pe'er et al. Virtual Corridors for Conservation Management, Conservation Biology (2005): 1997–2003 | | ||
| + | | | Malaquias et al. Larval Dispersal of Spodoptera frugiperda Strains on Bt Cotton: A Model for Understanding Resistance Evolution and Consequences for its Management. Scientific reports. 2017 Nov 23;7(1):16109.| | ||
| + | | | Brown, C.; Bakam, I.; Smith. P.; Matthews, R.B., (2016) An agent-based modelling approach to evaluate factors influencing bioenergy crop adoption in north-east Scotland., Global Change Biology Bioenergy, 8, 226-244.| | ||
cst-317/classes2023.1686708139.txt.gz · Last modified: 2023/06/13 23:02 by pedro
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